configure: WARNING: unrecognized options: --without-rubygem checking build system type... x86_64-apple-darwin17.7.0 checking host system type... x86_64-apple-darwin17.7.0 checking target system type... x86_64-apple-darwin17.7.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /Users/monet/scratch/feab46331a00-5-1-1/MonetDB/buildtools/conf/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '502' is supported by ustar format... yes checking whether GID '20' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for pkg-config... /usr/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking whether clang understands -c and -o together... yes checking dependency style of clang... none checking how to run the C preprocessor... clang -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking how to run the C preprocessor... clang -E checking for gcc... (cached) clang checking whether we are using the GNU C compiler... (cached) yes checking whether clang accepts -g... (cached) yes checking for clang option to accept ISO C89... (cached) none needed checking whether clang understands -c and -o together... (cached) yes checking dependency style of clang... (cached) none checking for clang option to accept ISO C99... none needed checking compiler type & version... clang-10.0.0 checking size of long... 8 checking whether byte ordering is bigendian... no checking whether clang supports -Werror... yes checking whether clang supports -Wall... yes checking whether clang supports -Wextra... yes checking whether clang supports -W... yes checking whether clang supports -Werror-implicit-function-declaration... yes checking whether clang supports -Wpointer-arith... yes checking whether clang supports -Wundef... no checking whether clang supports -Wformat=2... yes checking whether clang supports -Wformat-overflow=1... no checking whether clang supports -Wno-format-truncation... no checking whether clang supports -Wno-format-nonliteral... yes checking whether clang supports -Wno-cast-function-type... no checking whether clang supports -Winit-self... yes checking whether clang supports -Winvalid-pch... yes checking whether clang supports -Wmissing-declarations... yes checking whether clang supports -Wmissing-format-attribute... yes checking whether clang supports -Wmissing-prototypes... yes checking whether clang supports -Wno-missing-field-initializers... yes checking whether clang supports -Wold-style-definition... yes checking whether clang supports -Wpacked... yes checking whether clang supports -Wunknown-pragmas... yes checking whether clang supports -Wvariadic-macros... yes checking whether clang supports -fstack-protector-all... yes checking whether clang supports -Wstack-protector... yes checking whether clang supports -Wpacked-bitfield-compat... no checking whether clang supports -Wsync-nand... no checking whether clang supports -Wjump-misses-init... no checking whether clang supports -Wmissing-include-dirs... yes checking whether clang supports -Wlogical-op... no checking whether clang supports -Wduplicated-cond... no checking whether clang supports -Wduplicated-branches... no checking whether clang supports -Wrestrict... no checking whether clang supports -Wnested-externs... yes checking whether clang supports -Wno-char-subscripts... yes checking whether clang supports -Wunreachable-code... yes checking for ld -Bsymbolic-functions option... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking how to convert x86_64-apple-darwin17.7.0 file names to x86_64-apple-darwin17.7.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin17.7.0 file names to toolchain format... func_convert_file_noop checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin17.7.0 dyld checking how to hardcode library paths into programs... immediate checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for --enable-debug... no checking for --enable-assert... no checking for --enable-optimize... yes: removed -O2, added -O3, added -fomit-frame-pointer checking for bash... /bin/sh checking for rm... rm -f checking for mv... mv -f checking whether ln -s works... yes checking for gdiff... no checking for diff... diff checking for rpmbuild... false checking for python... /usr/local/bin/python checking major version of /usr/local/bin/python... 2 checking for python2... /usr/local/bin/python2 checking for python3... /usr/local/bin/python3 checking for bison... bison -y checking /usr/bin/install -c --backup option... checking for bzip2... no checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzopen in -lbz2... yes checking for snappy... no checking for liblz4 >= 1.8.0... yes checking for dlopen in -ldl... (cached) yes checking for sqrt in -lm... yes checking for malloc in -lumem... no checking for malloc in -lmtmalloc... no checking for malloc in -lmalloc... no checking for kvm_open in -lkvm... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking semaphore.h usability... yes checking semaphore.h presence... yes checking for semaphore.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for library containing pthread_kill... none required checking for library containing pthread_sigmask... none required checking for library containing sem_wait... none required checking whether we have pthread support... yes: checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for readline in -lreadline... yes checking for rl_completion_matches in -lreadline... yes checking whether rl_completion_func_t exists... yes checking for ld... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for shared library run path origin... done checking 32-bit host C ABI... no checking for the common suffixes of directories in the library search path... lib,lib checking for iconv... yes checking for working iconv... yes checking how to link with libiconv... -liconv checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for library containing uuid_generate... none required checking for CC_MD5_Update... yes checking for CC_RIPEMD160_Update... no checking for CC_SHA1_Update... yes checking for CC_SHA224_Update... yes checking for CC_SHA256_Update... yes checking for CC_SHA384_Update... yes checking for CC_SHA512_Update... yes checking for libpcre >= 4.5... yes checking whether pcre comes with UTF-8 support... yes checking for libxml-2.0... yes checking for libcurl... yes checking for zlib... yes checking for liblzma... yes checking for R... /usr/local/bin/R checking for python2-config... /usr/local/bin/python2-config checking numpy/numpyconfig.h usability... no checking numpy/numpyconfig.h presence... no checking for numpy/numpyconfig.h... no checking for python3-config... /usr/local/bin/python3-config checking for numpy/numpyconfig.h... (cached) no checking sys/sem.h usability... yes checking sys/sem.h presence... yes checking for sys/sem.h... yes checking for semtimedop... no checking for fork... yes checking odbcinst.h usability... yes checking odbcinst.h presence... yes checking for odbcinst.h... yes checking for SQLGetPrivateProfileString in -lodbcinst... yes checking for SQLGetDiagRec in -lodbc... yes checking checking whether SQLColAttribute uses SQLLEN * or SQLPOINTER... using "SQLLEN *" checking size of SQLWCHAR... 2 checking for proj... no checking samtools/bam.h usability... no checking samtools/bam.h presence... no checking for samtools/bam.h... no checking bam/bam.h usability... no checking bam/bam.h presence... no checking for bam/bam.h... no checking bam/sam.h usability... no checking bam/sam.h presence... no checking for bam/sam.h... no checking bam/bgzf.h usability... no checking bam/bgzf.h presence... no checking for bam/bgzf.h... no checking for geos-config... /usr/local/bin/geos-config checking for geos >= 3.4.0... found 3.7.2 checking for gdal... no checking for cfitsio... yes checking for netcdf... yes checking for liblas-config... no checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dispatch/dispatch.h usability... yes checking dispatch/dispatch.h presence... yes checking for dispatch/dispatch.h... yes checking for dlfcn.h... 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(cached) 8 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of wchar_t... 4 checking size of __int128... 16 checking size of __int128_t... 16 checking whether char is unsigned... no checking for inline... inline checking for C/C++ restrict keyword... __restrict checking for flexible array members... yes checking if your compiler has usable ... yes checking if your compiler understands `__hidden'... no checking if your compiler understands `_Noreturn'... yes checking if your compiler can use NAN as an initializer... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for accept4... no checking for asctime_r... yes checking for backtrace... yes checking for cbrt... yes checking for clock_gettime... yes checking for ctime_r... yes checking for dispatch_semaphore_create... yes checking for fallocate... no checking for fcntl... yes checking for fsync... yes checking for ftime... yes checking for getexecname... no checking for getlogin... yes checking for getopt... yes checking for getopt_long... yes checking for getrlimit... yes checking for gettimeofday... yes checking for getuid... yes checking for gmtime_r... yes checking for localtime_r... yes checking for lockf... yes checking for madvise... yes checking for mremap... no checking for nanosleep... yes checking for nl_langinfo... yes checking for _NSGetExecutablePath... yes checking for pipe2... no checking for poll... yes checking for popen... yes checking for posix_fadvise... no checking for posix_fallocate... no checking for posix_madvise... yes checking for putenv... yes checking for setenv... yes checking for setsid... yes checking for shutdown... yes checking for sigaction... yes checking for stpcpy... yes checking for strcasestr... yes checking for strncasecmp... yes checking for strptime... yes checking for strsignal... yes checking for sysconf... yes checking for task_info... yes checking for times... yes checking for uname... yes checking __builtin_add_overflow... yes checking asctime_r3... no checking ctime_r3... no checking for _sys_siglist... no checking whether struct tm is in sys/time.h or time.h... time.h checking for struct tm.tm_zone... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating rpm.mk config.status: creating buildtools/Makefile config.status: creating common/Makefile config.status: creating clients/Makefile config.status: creating gdk/Makefile config.status: creating gdk/monetdb-gdk.pc config.status: creating monetdb5/Makefile config.status: creating sql/Makefile config.status: creating geom/Makefile config.status: creating tools/Makefile config.status: creating testing/Makefile config.status: creating testing/listexports.py config.status: creating buildtools/conf/Makefile config.status: creating common/stream/Makefile config.status: creating common/stream/monetdb-stream.pc config.status: creating common/options/Makefile config.status: creating common/utils/Makefile config.status: creating clients/mapilib/Makefile config.status: creating clients/mapilib/monetdb-mapi.pc config.status: creating clients/mapiclient/Makefile config.status: creating clients/odbc/Makefile config.status: creating clients/examples/Makefile config.status: creating clients/NT/Makefile config.status: creating monetdb5/mal/Makefile config.status: creating monetdb5/modules/Makefile config.status: creating monetdb5/optimizer/Makefile config.status: creating monetdb5/scheduler/Makefile config.status: creating monetdb5/tools/Makefile config.status: creating monetdb5/tools/monetdb5.pc config.status: creating monetdb5/extras/Makefile config.status: creating monetdb5/NT/Makefile config.status: creating sql/include/Makefile config.status: creating sql/common/Makefile config.status: creating sql/storage/Makefile config.status: creating sql/server/Makefile config.status: creating sql/backends/Makefile config.status: creating sql/scripts/Makefile config.status: creating sql/NT/Makefile config.status: creating geom/lib/Makefile config.status: creating geom/monetdb5/Makefile config.status: creating geom/sql/Makefile config.status: creating tools/mserver/Makefile config.status: creating tools/mserver/mserver5.1 config.status: creating tools/mserver/monet_version.c config.status: creating tools/merovingian/Makefile config.status: creating clients/odbc/setup/Makefile config.status: creating clients/odbc/winsetup/Makefile config.status: creating clients/odbc/driver/Makefile config.status: creating clients/odbc/samples/Makefile config.status: creating clients/examples/C/Makefile config.status: creating clients/examples/php/Makefile config.status: creating clients/examples/perl/Makefile config.status: creating monetdb5/modules/atoms/Makefile config.status: creating monetdb5/modules/kernel/Makefile config.status: creating monetdb5/modules/mal/Makefile config.status: creating monetdb5/extras/mal_optimizer_template/Makefile config.status: creating monetdb5/extras/rapi/Makefile config.status: creating sql/storage/bat/Makefile config.status: creating sql/backends/monet5/Makefile config.status: creating tools/merovingian/utils/Makefile config.status: creating tools/merovingian/client/Makefile config.status: creating tools/merovingian/daemon/Makefile config.status: creating tools/merovingian/daemon/monetdbd.1 config.status: creating sql/backends/monet5/vaults/Makefile config.status: creating sql/backends/monet5/UDF/Makefile config.status: creating sql/backends/monet5/generator/Makefile config.status: creating tools/merovingian/daemon/config/Makefile config.status: creating tools/merovingian/daemon/config/.merovingian_properties config.status: creating tools/merovingian/daemon/config/monetdbd.service config.status: creating tools/merovingian/daemon/config/monetdbd config.status: creating sql/backends/monet5/vaults/bam/Makefile config.status: creating sql/backends/monet5/vaults/fits/Makefile config.status: creating sql/backends/monet5/vaults/lidar/Makefile config.status: creating sql/backends/monet5/vaults/netcdf/Makefile config.status: creating sql/backends/monet5/vaults/shp/Makefile config.status: creating sql/backends/monet5/UDF/udf/Makefile config.status: creating sql/backends/monet5/UDF/capi/Makefile config.status: creating sql/backends/monet5/UDF/pyapi/Makefile config.status: creating sql/backends/monet5/UDF/pyapi3/Makefile config.status: creating testing/Mtest.py config.status: creating testing/Mlog config.status: creating monetdb_config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-rubygem MonetDB is configured as follows: * Compilation specifics: Host: x86_64-apple-darwin17.7.0 Compiler: clang (clang-10.0.0; Apple LLVM version 10.0.0 (clang-1000.10.44.4) Target: x86_64-apple-darwin17.7.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin) CFLAGS: -O3 -fomit-frame-pointer -g -Werror -Wall -Wextra -W -Werror-implicit-function-declaration -Wpointer-arith -Wformat=2 -Wno-format-nonliteral -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-format-attribute -Wmissing-prototypes -Wno-missing-field-initializers -Wold-style-definition -Wpacked -Wunknown-pragmas -Wvariadic-macros -fstack-protector-all -Wstack-protector -Wmissing-include-dirs -Wnested-externs -Wno-char-subscripts -Wunreachable-code X_CFLAGS: -g -Werror -Wall -Wextra -W -Werror-implicit-function-declaration -Wpointer-arith -Wformat=2 -Wno-format-nonliteral -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-format-attribute -Wmissing-prototypes -Wno-missing-field-initializers -Wold-style-definition -Wpacked -Wunknown-pragmas -Wvariadic-macros -fstack-protector-all -Wstack-protector -Wmissing-include-dirs -Wnested-externs -Wno-char-subscripts -Wunreachable-code LDFLAGS: * Enabled/disabled build options: strict is enabled assert is disabled (by command line option) debug is disabled (by command line option) optimize is enabled developer is enabled sanitizer is disabled (by default) * Enabled/disabled components: gdk is enabled monetdb5 is enabled sql is enabled geom is enabled py2integration is disabled (numpy version >= 1.7.0 not found) py3integration is disabled (numpy version >= 1.7.0 not found) rintegration is enabled odbc is enabled testing is enabled embedded is disabled (by default) * Available features/extensions: bz2 = yes curl = yes fits = yes getaddrinfo = yes gdal = no (gdal library not found) liblas = no (liblas-config not found) liblzma = yes libxml2 = yes lidar = no (liblas-config not found) lz4 = yes netcdf = yes openssl = proj = no (proj library not found) pthread = yes python2 = yes python3 = yes readline = /usr/local/opt/readline regex = PCRE samtools = no (Neither samtool/bgzf.h nor bam/bgzf.h header found) shp = no (gdal library required for ESRI Shapefile vault) snappy = no (snappy library not found) unixodbc = yes valgrind = no (by default) zlib = yes * Important options: OID size: 64 bits largest integer type: 128 bits largest decimal type: 38 digits